PUBMED Search

2018

A change of view: homologous recombination at single-molecule resolution.

Kaniecki K, De Tullio L, Greene EC.

Nat Rev Genet. 2018 Apr;19(4):191-207. doi: 10.1038/nrg.2017.92. Epub 2017 Dec 11. Review.

PMID: 29225334

 

Spontaneous self-segregation of Rad51 and Dmc1 DNA recombinases within mixed recombinase filaments.

Crickard JB, Kaniecki K, Kwon Y, Sung P, Greene EC.

J Biol Chem. 2018 Jan 30. pii: jbc.RA117.001143. doi: 10.1074/jbc.RA117.001143. [Epub ahead of print]

PMID: 29382724

 

Regulation of Hed1 and Rad54 binding during maturation of the meiosis-specific presynaptic complex.

Crickard JB, Kaniecki K, Kwon Y, Sung P, Lisby M, Greene EC.

EMBO J. 2018 Feb 14. pii: e98728. doi: 10.15252/embj.201798728. [Epub ahead of print]

PMID: 29444896

 

Single-Stranded DNA Curtains for Studying the Srs2 Helicase Using Total Internal Reflection Fluorescence Microscopy.

De Tullio L, Kaniecki K, Greene EC.

Methods Enzymol. 2018;600:407-437. doi: 10.1016/bs.mie.2017.12.004. Epub 2018 Feb 1.

PMID: 29458768

2017

Dissociation of Rad51 Presynaptic Complexes and Heteroduplex DNA Joints by Tandem Assemblies of Srs2.

Kaniecki K, De Tullio L, Gibb B, Kwon Y, Sung P, Greene EC.

Cell Rep. 2017 Dec 12;21(11):3166-3177. doi: 10.1016/j.celrep.2017.11.047.

PMID: 29241544

 

The condensin complex is a mechanochemical motor that translocates along DNA.

Terakawa T, Bisht S, Eeftens JM, Dekker C, Haering CH, Greene EC.

Science. 2017 Nov 3;358(6363):672-676. doi: 10.1126/science.aan6516. Epub 2017 Sep 7.

PMID: 28882993

 

BRCA1-BARD1 promotes RAD51-mediated homologous DNA pairing.

Zhao W, Steinfeld JB, Liang F, Chen X, Maranon DG, Jian Ma C, Kwon Y, Rao T, Wang W, Sheng C, Song X, Deng Y, Jimenez-Sainz J, Lu L, Jensen RB, Xiong Y, Kupfer GM, Wiese C, Greene EC, Sung P.

Nature. 2017 Oct 19;550(7676):360-365. doi: 10.1038/nature24060. Epub 2017 Oct 4.

PMID: 28976962

 

Yeast Srs2 Helicase Promotes Redistribution of Single-Stranded DNA-Bound RPA and Rad52 in Homologous Recombination Regulation.

De Tullio L, Kaniecki K, Kwon Y, Crickard JB, Sung P, Greene EC.

Cell Rep. 2017 Oct 17;21(3):570-577. doi: 10.1016/j.celrep.2017.09.073.

PMID: 29045827

 

Monitoring Replication Protein A (RPA) dynamics in homologous recombination through site-specific incorporation of non-canonical amino acids.

Pokhrel N, Origanti S, Davenport EP, Gandhi D, Kaniecki K, Mehl RA, Greene EC, Dockendorff C, Antony E.

Nucleic Acids Res. 2017 Sep 19;45(16):9413-9426. doi: 10.1093/nar/gkx598.

PMID: 28934470

 

Sequential eviction of crowded nucleoprotein complexes by the exonuclease RecBCD molecular motor.

Terakawa T, Redding S, Silverstein TD, Greene EC.

Proc Natl Acad Sci U S A. 2017 Aug 1;114(31):E6322-E6331. doi: 10.1073/pnas.1701368114. Epub 2017 Jul 17.

PMID: 28716908

 

Human RAD52 interactions with replication protein A and the RAD51 presynaptic complex.

Ma CJ, Kwon Y, Sung P, Greene EC.

J Biol Chem. 2017 Jul 14;292(28):11702-11713. doi: 10.1074/jbc.M117.794545. Epub 2017 May 27.

PMID: 28551686

 

Sequence imperfections and base triplet recognition by the Rad51/RecA family of recombinases.

Lee JY, Steinfeld JB, Qi Z, Kwon Y, Sung P, Greene EC.

J Biol Chem. 2017 Jun 30;292(26):11125-11135. doi: 10.1074/jbc.M117.787614. Epub 2017 May 5.

PMID: 28476890

 

Replication Protein A Blocks the Way.

Greene EC.

Biochemistry. 2017 Apr 4;56(13):1809-1810. doi: 10.1021/acs.biochem.7b00221. Epub 2017 Mar 23. No abstract available.

PMID: 28333436

 

Protein dynamics of human RPA and RAD51 on ssDNA during assembly and disassembly of the RAD51 filament.

Ma CJ, Gibb B, Kwon Y, Sung P, Greene EC.

Nucleic Acids Res. 2017 Jan 25;45(2):749-761. doi: 10.1093/nar/gkw1125. Epub 2016 Nov 29.

PMID: 27903895

 

Telomere Recognition and Assembly Mechanism of Mammalian Shelterin.

Erdel F, Kratz K, Willcox S, Griffith JD, Greene EC, de Lange T.

Cell Rep. 2017 Jan 3;18(1):41-53. doi: 10.1016/j.celrep.2016.12.005.

PMID: 28052260

 

Single-Stranded DNA Curtains for Studying Homologous Recombination.

Ma CJ, Steinfeld JB, Greene EC.

Methods Enzymol. 2017;582:193-219. doi: 10.1016/bs.mie.2016.08.005. Epub 2016 Oct 22.

PMID: 28062035

2016

A Polar and Nucleotide-Dependent Mechanism of Action for RAD51 Paralogs in RAD51 Filament Remodeling.

Taylor MRG, Špírek M, Jian Ma C, Carzaniga R, Takaki T, Collinson LM, Greene EC, Krejci L, Boulton SJ.

Mol Cell. 2016 Dec 1;64(5):926-939. doi: 10.1016/j.molcel.2016.10.020. Epub 2016 Nov 17.

PMID: 27867009

 

ATP hydrolysis Promotes Duplex DNA Release by the RecA Presynaptic Complex.

Lee JY, Qi Z, Greene EC.

J Biol Chem. 2016 Oct 14;291(42):22218-22230. Epub 2016 Sep 1.

PMID: 27587394

 

Visualizing recombination intermediates with single-stranded DNA curtains.

Qi Z, Greene EC.

Methods. 2016 Aug 1;105:62-74. doi: 10.1016/j.ymeth.2016.03.027. Epub 2016 Mar 30. Review.

PMID: 27038747

 

Generalized nucleation and looping model for epigenetic memory of histone modifications.

Erdel F, Greene EC.

Proc Natl Acad Sci U S A. 2016 Jul 19;113(29):E4180-9. doi: 10.1073/pnas.1605862113. Epub 2016 Jul 5.

PMID: 27382173
 

DNA Sequence Alignment during Homologous Recombination.

Greene EC.

J Biol Chem. 2016 May 27;291(22):11572-80. doi: 10.1074/jbc.R116.724807. Epub 2016 Apr 15. Review.

PMID: 27129270
 

Single-Molecule Imaging Reveals a Collapsed Conformational State for DNA-Bound Cohesin.

Stigler J, Çamdere GÖ, Koshland DE, Greene EC.

Cell Rep. 2016 May 3;15(5):988-98. doi: 10.1016/j.celrep.2016.04.003. Epub 2016 Apr 21.

PMID:27117417

 

On the influence of protein-DNA register during homologous recombination.

Greene EC.

Cell Cycle. 2016;15(2):172-5. doi: 10.1080/15384101.2015.1121352.

PMID: 26652653

2015

Surveillance and Processing of Foreign DNA by the Escherichia coli CRISPR-Cas System.

Redding S, Sternberg SH, Marshall M, Gibb B, Bhat P, Guegler CK, Wiedenheft B, Doudna JA, Greene EC.

Cell. 2015 Nov 5;163(4):854-65. doi: 10.1016/j.cell.2015.10.003.

PMID: 26522594

 

DNA RECOMBINATION. Base triplet stepping by the Rad51/RecA family of recombinases.

Lee JY, Terakawa T, Qi Z, Steinfeld JB, Redding S, Kwon Y, Gaines WA, Zhao W, Sung P, Greene EC.

Science. 2015 Aug 28;349(6251):977-81. doi: 10.1126/science.aab2666. Erratum in: Science. 2015 Oct 30;350(6260):aad6940.

PMID: 26315438

 

The Dynamics of Eukaryotic Replication Initiation: Origin Specificity, Licensing, and Firing at the Single-Molecule Level

Duzdevich D, Warner MD, Ticau S, Ivica NA, Bell SP,  Greene EC..

Mol Cell. 2015 May 7;58(3):483-94. doi: 10.1016/j.molcel.2015.03.017. Epub 2015 Apr 23.

PMID: 25921072

 

A Molecular Take on Aesop's The Oak and the Reeds.

Moevus CJ, Greene EC.

Cell. 2015 Mar 12;160(6):1039-40. doi: 10.1016/j.cell.2015.02.036.

PMID: 25768898

 

DNA Sequence Alignment by Microhomology Sampling during Homologous Recombination.

Qi Z, Redding S, Lee JY, Gibb B, Kwon Y, Niu H, Gaines WA, Sung P, Greene EC.

Cell. 2015 Feb 26;160(5):856-69. doi: 10.1016/j.cell.2015.01.029. Epub 2015 Feb 12.

PMID: 25684365

2014

Protein dynamics during presynaptic-complex assembly on individual single-stranded DNA molecules.

Gibb B, Ye LF, Kwon Y, Niu H, Sung P, Greene EC.

Nat Struct Mol Biol. 2014 Oct;21(10):893-900. doi: 10.1038/nsmb.2886. Epub 2014 Sep 7.

PMID: 25195049

 

DNA curtains: novel tools for imaging protein-nucleic acid interactions at the single-molecule level.

Collins BE, Ye LF, Duzdevich D, Greene EC.

Methods Cell Biol. 2014;123:217-34. doi: 10.1016/B978-0-12-420138-5.00012-4. Review.

PMID: 24974030

 

Single-molecule imaging of FtsK translocation reveals mechanistic features of protein-protein collisions on DNA.

Lee JY, Finkelstein IJ, Arciszewska LK, Sherratt DJ, Greene EC.

Mol Cell. 2014 Jun 5;54(5):832-43. doi: 10.1016/j.molcel.2014.03.033. Epub 2014 Apr 24.

PMID: 24768536

 

RPA antagonizes microhomology-mediated repair of DNA double-strand breaks.

Deng SK, Gibb B, de Almeida MJ, Greene EC, Symington LS.

Nat Struct Mol Biol. 2014 Apr;21(4):405-12. doi: 10.1038/nsmb.2786. Epub 2014 Mar 9.

PMID: 24608368

 

Visualizing protein movement on DNA at the single-molecule level using DNA curtains.

Silverstein TD, Gibb B, Greene EC.

DNA Repair (Amst). 2014 Aug;20:94-109. doi: 10.1016/j.dnarep.2014.02.004. Epub 2014 Mar 2.

PMID: 24598576

 

Concentration-dependent exchange of replication protein A on single-stranded DNA revealed by single-molecule imaging.

Gibb B, Ye LF, Gergoudis SC, Kwon Y, Niu H, Sung P, Greene EC.

PLoS One. 2014 Feb 3;9(2):e87922. doi: 10.1371/journal.pone.0087922. eCollection 2014.

PMID: 24498402

 

DNA interrogation by the CRISPR RNA-guided endonuclease Cas9.

Sternberg SH, Redding S, Jinek M, Greene EC, Doudna JA.

Nature. 2014 Mar 6;507(7490):62-7. doi: 10.1038/nature13011. Epub 2014 Jan 29.

PMID: 24476820

 

DNA dynamics and single-molecule biology.

Duzdevich D, Redding S, Greene EC.

Chem Rev. 2014 Mar 26;114(6):3072-86. doi: 10.1021/cr4004117. Epub 2014 Jan 8. Review. No abstract available. 

PMID: 24400809

2013

How do proteins locate specific targets in DNA?

Redding S, Greene EC.

Chem Phys Lett. 2013 May 10;570. doi: 10.1016/j.cplett.2013.03.035.

PMID: 24187380

 

Tension modulates actin filament polymerization mediated by formin and profilin.

Courtemanche N, Lee JY, Pollard TD, Greene EC.

Proc Natl Acad Sci U S A. 2013 Jun 11;110(24):9752-7. doi: 10.1073/pnas.1308257110. Epub 2013 May 28.

PMID: 23716666

 

Molecular traffic jams on DNA.

Finkelstein IJ, Greene EC.

Annu Rev Biophys. 2013;42:241-63. doi: 10.1146/annurev-biophys-083012-130304. Epub 2013 Feb 28. Review.

PMID: 23451891

 

Target search dynamics during post-replicative mismatch repair.

Gorman J, Greene EC.

Cell Cycle. 2013 Feb 15;12(4):537-8. doi: 10.4161/cc.23669. Epub 2013 Jan 23. No abstract available. 

PMID: 23343769

2012

Towards physiological complexity with in vitro single-molecule biophysics.

Duzdevich D, Greene EC.

Philos Trans R Soc Lond B Biol Sci. 2012 Dec 24;368(1611):20120271. doi: 10.1098/rstb.2012.0271. Print 2013 Feb 5. Review.

PMID: 23267187

 

The promoter-search mechanism of Escherichia coli RNA polymerase is dominated by three-dimensional diffusion.

Wang F, Redding S, Finkelstein IJ, Gorman J, Reichman DR, Greene EC.

Nat Struct Mol Biol. 2013 Feb;20(2):174-81. doi: 10.1038/nsmb.2472. Epub 2012 Dec 23.

PMID: 23262491

 

Sliding to the rescue of damaged DNA.

Gibb B, Greene EC.

Elife. 2012 Dec 13;1:e00347. doi: 10.7554/eLife.00347.

PMID: 23240090

 

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